Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 2
Rules claiming more threads will be scaled down.
Job stats:
job          count
---------  -------
DEA              1
all              1
visualize        1
total            3

Select jobs to execute...

[Mon Dec 18 12:00:47 2023]
rule DEA:
    input: /home/Avocado_03/quantity/gene_count_matrix.csv
    output: /home/Avocado_03/DEA/dea_control_chitosan.csv, /home/Avocado_03/DEA/deg_control_chitosan.csv
    jobid: 2
    reason: Missing output files: /home/Avocado_03/DEA/dea_control_chitosan.csv
    resources: tmpdir=/tmp

[Mon Dec 18 12:01:09 2023]
Finished job 2.
1 of 3 steps (33%) done
Select jobs to execute...

[Mon Dec 18 12:01:09 2023]
rule visualize:
    input: /home/Avocado_03/DEA/dea_control_chitosan.csv, /home/Avocado_03/quantity/gene_tpm_matrix.csv
    output: /home/Avocado_03/DEA/volcano_control_chitosan.pdf, /home/Avocado_03/DEA/heatmap__control_chitosan.pdf
    jobid: 1
    reason: Missing output files: /home/Avocado_03/DEA/heatmap__control_chitosan.pdf, /home/Avocado_03/DEA/volcano_control_chitosan.pdf; Input files updated by another job: /home/Avocado_03/DEA/dea_control_chitosan.csv
    resources: tmpdir=/tmp

[Mon Dec 18 12:01:11 2023]
Finished job 1.
2 of 3 steps (67%) done
Select jobs to execute...

[Mon Dec 18 12:01:11 2023]
localrule all:
    input: /home/Avocado_03/DEA/volcano_control_chitosan.pdf, /home/Avocado_03/DEA/heatmap__control_chitosan.pdf
    jobid: 0
    reason: Input files updated by another job: /home/Avocado_03/DEA/heatmap__control_chitosan.pdf, /home/Avocado_03/DEA/volcano_control_chitosan.pdf
    resources: tmpdir=/tmp

[Mon Dec 18 12:01:11 2023]
Finished job 0.
3 of 3 steps (100%) done
Complete log: .snakemake/log/2023-12-18T120047.346669.snakemake.log
